rs45860393 SNP Detail

Summary

• ID
  rs45860393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAAAAG AAAAACGAAT
  AAGGTGAAAA TCGCAACTAC TATTTATAGA ATCAAAATGG GTTCATCCAT TGAGTTTTAA
  CTTTCAAAAA TCATAAAGTA CCATCCTAAA TATCTGAGAT TTCTTGAATT GCCTAGTGAC
  CTGTGGGATG TACGTCAGAA TATTACCCAG AACTGAAGTT GTGTCCTTTG AACTTCAGCA
  Y
  TGTAGAACTA TGAACCGTGG CTGTGTTAAA AATGATACAT GTATTCAAAT ATTTCCACAG
  AATTTAAAGT TTGATTTTAT AATTAGTTTT TAAATTGCAA ACCTTACAAA AATTTTCCAA
  AATTTACTTA GAAGCATTTC AGAGCTCTTT TCTTTCAAAG CTGAAGTCTA CCTTGCCTTC
  AGATTCATAA TCGTTCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60500114	NES16522453	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45860393					SNP	T	T	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500114	NES16522453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510686 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	342 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	463 bp downstream
Rr518521	regulatory region 518521	151 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139172	transcription start site region 139172	1938 bp downstream
Tssr139173	transcription start site region 139173	404 bp upstream
Tssr139174	transcription start site region 139174	1187 bp upstream
Tssr139175	transcription start site region 139175	1275 bp upstream
Tssr139176	transcription start site region 139176	1811 bp upstream