rs45860507 SNP Detail

Summary

• ID
  rs45860507
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78067460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCAGCC AAAACACAGA
  GCCTGTACCT TCTCCATTCC ATTGGTTCTC TTGGAAGCTG CTGGGAAAGT GTCGGATAAA
  TGGAGGTAAA TAAATTCTGA TCTCCAGCAC CTACAACAGG AACAAAGAAA AACCAGTTAT
  GTGGCTTTAA GATAAATACA GGCAAAATAC ACTTTATAGT TTAAGATATT GATGTTCTTA
  R
  GCAATATTAT CTTAAAATAA GTGACCAGTT TCAGGAACCT GAGCACTTCA TCTGCATGGT
  TGAACTGGGG TCCTCCACAA AGGTCTATGA CTCTCACAGA TTCTGCCTTG GAAGCAGTTC
  AGCCAGCCCC TCCCCCACCC CTCTTTCTCT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTTTTG TTTTGGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	WSB/EiJ
ss52382258	NES15267178	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	WSB/EiJ
rs45860507					SNP	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52382258	NES15267178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78067460 () rs orientation: forward

Symbol	Name	Function Class
D10Mit139	DNA segment, Chr 10, Massachusetts Institute of Technology 139	1034 bp proximal
D10Mit139.1	DNA segment, Chr 10, Massachusetts Institute of Technology 139.1	1148 bp proximal
Trappc10	trafficking protein particle complex 10	within coordinates