rs45860650 SNP Detail

Summary

• ID
  rs45860650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50194426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAGTGG AGAGGAAAGG
  AGGGTGAACG GCTCTGTCTA GTGTTAGTCC AGTTTGTCCT TGCTTGTCCG TGGTAGGGTG
  AATCTTACCA GGGATTCACG GAGCTCTAAA GGTTGATCAA AGTCCCAGGT GATGAGATTA
  TTCCGACACT AATATGCAAT CCGTGAGGTT TTCTTTTGCA TCTTCCCTCG AAGCTGTTTG
  Y
  ATCAATGCCT TCTGATCAAC ATATGGGCTC CTTTCCTTCT AGAGAAGACC AAGTCTCAAT
  AAGGAAGGGT GCACACACAC TTAAGCAAAC TAAGGCATCG CTGAGTGCTT GACCATTGCG
  TCGTGAAGAC AGTCGTTTTA ACAAACCAGA AAGACAAAAG ACAGAATTTA TGCTCAACTA
  AGCAGATCTA AAACATATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146531277	ENSMUSSNP3125323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45860650					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50194426 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	521 bp proximal
Rr556733	regulatory region 556733	871 bp proximal
Tssr17697	transcription start site region 17697	1122 bp downstream