rs45861828 SNP Detail

Summary

• ID
  rs45861828
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:101438298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GGTCGGAGTA CCGGACCTTA
  C
  CAGCAGCAAA TGCTCTTAAC TGCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146736144	ENSMUSSNP1148225	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324798525	CHEV_14_101600079	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45861828					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:101438298 () rs orientation: forward

Symbol	Name	Function Class
Prr30	proline rich 30	532 bp upstream
Tssr126900	transcription start site region 126900	1824 bp downstream
Tssr130022	transcription start site region 130022	1943 bp upstream
Tssr130023	transcription start site region 130023	1903 bp upstream
Tssr130024	transcription start site region 130024	1789 bp upstream
Tssr130025	transcription start site region 130025	539 bp upstream
Tssr130026	transcription start site region 130026	444 bp upstream