rs45862259 SNP Detail

Summary

• ID
  rs45862259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67061139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGGACAG AGCTACTCTG GAACTTACAA ATGATTAATA
  GTCCAGATCA CAAATATTGC TGTGGTTAGG AGGAGTGTGC CAGGCCCAAA TCTCTTTTCT
  W
  CAAGTTGCTG GGTGTGTGGT TTTTCACAAG TCATTGGACT TTTGGGCTCT TTTCTCCTCT
  TCTCTTTCCA TGTGTGTCTG CGTGCAGCCT CCATAAAGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136578014	ENSMUSSNP3036672	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss322989807	CHEV_9_67001664	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45862259					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67061139 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	1708 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	1705 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	1484 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	167 bp distal
Rr681888	regulatory region 681888	247 bp proximal
Tssr90326	transcription start site region 90326	1362 bp downstream
Tssr90327	transcription start site region 90327	1389 bp downstream