rs45862400 SNP Detail

Summary

• ID
  rs45862400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72888647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTGCGC CCGCCTCCCG
  CCAGGGTCAG TGGTGGGATG GGGTCTGATG GAGGAAGGCC CTGCTACTGA CAAACAAAAC
  CTAACAACAG TCATGTGACT TTCTGGAGGG ATGGGATGAG CACAGTGGGG TTGGTGGACA
  CTGATACTGC CCTACTAGCC GCTTGGTGTT GAGGGAGTCT CTTCCTCACG GATCAGGCAG
  Y
  GTGTGAGGCC TTGCCTAGTA CCAGTGTTTT GTGGGCTCCT TTCCCTCATG CTAGGCGCTC
  CTTTTTTGTC TTCAGACCCC TTGCCAGCAG GAGTTGGACC AGGTCCTGGA GCGGATCTCC
  ACCATGCGCC TTCCGGATGA TCGGGGCCCC CTGGAACATC TCTACTCCCT GCACATCCCC
  AACTGTGACA AGCATGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750564	NES16381647	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45862400					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750564	NES16381647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72888647 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	402 bp downstream
Tssr7322	transcription start site region 7322	344 bp downstream
Tssr7323	transcription start site region 7323	305 bp downstream
Tssr7324	transcription start site region 7324	274 bp downstream
Tssr7325	transcription start site region 7325	254 bp downstream
Tssr7326	transcription start site region 7326	219 bp downstream
Tssr7327	transcription start site region 7327	198 bp downstream
Tssr7328	transcription start site region 7328	89 bp upstream
Tssr7329	transcription start site region 7329	124 bp upstream
Tssr7330	transcription start site region 7330	138 bp upstream
Tssr12178	transcription start site region 12178	364 bp upstream
Tssr12179	transcription start site region 12179	315 bp upstream
Tssr12180	transcription start site region 12180	252 bp upstream
Tssr12181	transcription start site region 12181	222 bp upstream
Tssr12182	transcription start site region 12182	189 bp upstream
Tssr12183	transcription start site region 12183	177 bp upstream