rs45862537 SNP Detail

Summary

• ID
  rs45862537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158525401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAATGAA ATCTGGTGCC
  CTCTTCTGAC CAGCAGGCAT ACATGCAGGC CAAAACACTG TATACTTAAT AAATAAATCT
  TGGAGGAGGG TGGGGGGGGG ACCCAGATGA TAGGAACTGA CCATATTGCT GCTGCCATGG
  TAAAGAGTCC TTGGTGAGAT CAGATGACTA GGGCAGCTAG TTAACAGGCA GGATCAGTCG
  Y
  AGTCCCTCCT CTTTCTAACT GTGTCCCTCT AGTGTACCCA CTGAAGAAAA CCTCACCTGG
  GGGCACCTAA CAAAAAAGGA ATGCAAGCTT GCTTGCAGCA TTTCAAAAGC TGCTCACAGA
  GTTCCAAAGA AGGAATGACA CAGTAGCTTA CTAACAGCTA AGCAACGTGA AGACTACACA
  GGAGTCTTAC CTTAGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60333203	NES15837272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45862537					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60333203	NES15837272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158525401 () rs orientation: forward

Symbol	Name	Function Class
Gm53639	predicted gene, 53639	1632 bp upstream
Rr421480	regulatory region 421480	167 bp distal
Rr421481	regulatory region 421481	1448 bp proximal