rs45862657 SNP Detail

Summary

• ID
  rs45862657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGACA TTTATCCACT
  GAGCCGTCTC GCCAGTCCTT AAGATGGTTT TAAATGGTTT ATAAGGTTGT AACTTCAATT
  GTGAGTCAAA ATATCTGCAT TAGGAACACC GCCTCACGTG GCTCCTGCAT TTTCTAAAGC
  TCGCTGGGTT TATCATTGTG TGTTTTGTTT GGATTTAGGT GTATCCCTGG GGAACATTCT
  Y
  TAAAACTTCA AAGTCTCCCC CACCTTCCAA AGCCCTGGTC GCAAATGCTC TCAAGGGGTT
  CCCATGTGCC TGTGCTCTTG GCAACCACAG CCCAGGCCTT AGAATCGGGC CCCACACGGG
  AGCACCTAGC CATTTGGATT TTTATGCATG CTGTAGATGT AGATTGACGA TCGGATTTGA
  TGCTACAGAC CTCCATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148805403	ENSMUSSNP3254227	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss322156707	CHEV_7_36019263	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45862657					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	315 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1105 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	526 bp downstream
Rr645337	regulatory region 645337	859 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	387 bp proximal
Rr645340	regulatory region 645340	449 bp proximal
Rr645341	regulatory region 645341	1116 bp proximal