rs45863762 SNP Detail

Summary

• ID
  rs45863762
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12423098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACCTTTGA TGTCTGAAGC GAAACTCCTT TCACCAAGGG
  CCAGATTCGG AAACTTCAAC CTTGGCTGCT GGAGTCCTGT AGTGATACCT GTAACAATCA
  S
  AAATTCTTAA TCGCTTGTGG TATGGTTTTA ATTCTAGATG TTTTATCTCT CTGGGAGTAT
  AGTTTATAGA AACACAAAGT ACTTGATTTC CTGTGTCGGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61349671	NES16962060	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45863762					SNP	G	G	G	C	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61349671	NES16962060	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12423098 () rs orientation: forward

Symbol	Name	Function Class
4921511I17Rik	RIKEN cDNA 4921511I17 gene	within coordinates
Cyria	CYFIP related Rac1 interactor A	within coordinates
Rr259609	regulatory region 259609	1898 bp distal
Rr259610	regulatory region 259610	1298 bp distal
Rr386868	regulatory region 386868	within coordinates