rs45863797 SNP Detail

Summary

• ID
  rs45863797
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48767755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG CCAAGGACTG GAAACCCCTG
  S
  GTCAGCCGGG GACTCATATC TCCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145717247	ENSMUSSNP2775299	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss325408731	CHEV_17_48600052	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45863797					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48767755 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	1384 bp upstream
Rr528302	regulatory region 528302	206 bp distal
Rr528303	regulatory region 528303	948 bp proximal
Tssr145120	transcription start site region 145120	1628 bp upstream
Unc5cl	unc-5 family C-terminal like	within coordinates