rs45864889 SNP Detail

Summary

• ID
  rs45864889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132517029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGCGGTGA AGTTGGTATG GTCTGATGAA GAGGCTTAGT
  ACCCCTGAGT GCAGTGCCTA ATAAAACACT GTTAATATGA GCACTCATAT ATTTACCTAT
  R
  TGATATAATT GCATAATGCA TGGGACTTGT TTTTTCCTAT CCTTTTTAAC TACTTTTGTA
  TATTGTTGTA TAGGCAGTGT TAGCTACCCT CATCCTTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135914796	ENSMUSSNP1657883	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45864889					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132517029 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42876	predicted gene 42876			1801 bp downstream
Rr375756	regulatory region 375756			935 bp upstream
Rr585456	regulatory region 585456			611 bp proximal
Rr585457	regulatory region 585457			992 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant