rs45865405 SNP Detail

Summary

• ID
  rs45865405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30064369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAAAGA TCACCCTCTG
  GTCATCTGCT GCCATCCTCC TATAGTGGGT GGCTGAGCAC AGACGCCAGA AGCCCTGCCT
  GGGCGCTCAC CCCAGCTCCG ACGCATGCTA AGTTTCTCAA GTGTGGATTT CTAAGGCATG
  CTTATTCATC AGTAAGATAA ACTGCCACCC CTGGCTGGTT AGGTAACGCC ACAGTAAAGG
  Y
  ACTTGCTGCC CAACCTATCA ACCTGGGTTT GATCCCTGAG ACCCACATGG TAGAAGGAGA
  GACCCAACTC TGGCAAGTCG TTCTCTGGCT TGCACACATG CACACCCACA CAAGAGAAAT
  GAGCAGAAAA CGAACTGCAG AGTGAATGGA GAAAATAAAT GCTCGCAATA ATGCATAGTG
  AACACTCAAC ATCCTATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60556136	NES16574293	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45865405					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556136	NES16574293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30064369 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	1148 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330461	regulatory region 330461	1969 bp distal
Rr330462	regulatory region 330462	1032 bp proximal
Rr341132	regulatory region 341132	632 bp proximal
Rr392501	regulatory region 392501	1413 bp upstream
Tssr143596	transcription start site region 143596	1135 bp upstream
Tssr143597	transcription start site region 143597	1152 bp upstream