rs45865812 SNP Detail

Summary

• ID
  rs45865812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156056796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA GAGACCTTAG CTGGCTATTG
  Y
  TGCTCACGCC TGTAGTTTCA ATGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145791088	ENSMUSSNP1751453	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45865812					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156056796 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	1933 bp upstream
Rr421145	regulatory region 421145	1990 bp distal
Rr421146	regulatory region 421146	107 bp proximal
Rr421147	regulatory region 421147	245 bp proximal
Rr421148	regulatory region 421148	393 bp proximal
Rr421149	regulatory region 421149	513 bp proximal
Rr421150	regulatory region 421150	1411 bp proximal