rs45867856 SNP Detail

Summary

• ID
  rs45867856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG CTTCATTAAA AAAAAGGGTG
  R
  TCTAGTACCA GTGAGCTTGG GCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146998840	ENSMUSSNP4623728	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323275259	CHEV_10_24634816	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45867856					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790908 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	197 bp downstream
Med23	mediator complex subunit 23	1550 bp downstream
Tssr92746	transcription start site region 92746	610 bp upstream
Tssr92747	transcription start site region 92747	683 bp upstream
Tssr97085	transcription start site region 97085	482 bp downstream
Tssr97086	transcription start site region 97086	528 bp downstream
Tssr97087	transcription start site region 97087	562 bp downstream
Tssr97088	transcription start site region 97088	620 bp downstream
Tssr97089	transcription start site region 97089	639 bp downstream
Tssr97090	transcription start site region 97090	670 bp downstream
Tssr97091	transcription start site region 97091	1061 bp downstream
Tssr97092	transcription start site region 97092	1081 bp downstream
Tssr97093	transcription start site region 97093	1105 bp downstream
Tssr97094	transcription start site region 97094	1121 bp downstream
Tssr97095	transcription start site region 97095	1135 bp downstream
Tssr97096	transcription start site region 97096	1400 bp downstream
Tssr97097	transcription start site region 97097	1674 bp downstream
Tssr97098	transcription start site region 97098	1822 bp downstream