rs45868078 SNP Detail

Summary

• ID
  rs45868078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33024004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTACTT TTAAATAGAA
  GAAAGAAAAA GCCCGCAGTG CACCATATTC CCAGAGAGAA TCTCATCCAA GTACTAACCA
  AGCCAGCCCC TGCTTAGCTT CCGAGATCAG GTGACATTGA GCACACACAG AGATATCTTA
  CATTTTAAAG ATAGATTTTA GCTTACAACT TTCAAGGTAT GAGAACTTTC ACCTGAATAT
  S
  TGGGCTTTCT GTACTATAAA AAAACCAAAA CTATAAATTA AAATGTGAAC TTTTTTCCTC
  CCACCCATTT CTAATCACAG CCCCCATAGT AGTTAAAATG AAAACAAAAT TTCAATTTAA
  AAACGTGTTA CTACTTGCAG ATATGGCTAA TGAAGTTGTA ACTTTTCTAC ACTGTTAATA
  TTACAATCGT GTCTTTAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62681147	NES17310212	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45868078					SNP	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62681147	NES17310212	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33024004 () rs orientation: forward

Symbol	Name	Function Class
A930009K04Rik	RIKEN cDNA A930009K04 gene	993 bp downstream
Gm55909	predicted gene, 55909	53 bp upstream
Tssr147401	transcription start site region 147401	668 bp downstream
Zfp811	zinc finger protein 811	within coordinates