rs45868976 SNP Detail

Summary

• ID
  rs45868976
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5311743 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATAGCTCCAA CGCAGTGGGA
  CATTAAAATG TTCCCCCAAA TTTAGCACTT TCTAAATGTT AGTCCCAGAT CCTCTGGAGA
  AAATTCTGTT CTTTGGGGAA AAAAAAAAAA CTTAGCAGAG TAAAGAAATA GAATGTTTTC
  TCCGTCCGGT GCTTAGTTGG AACTGAGAAT GTAGACACAG TGTATGGGTC ACATAGAACC
  S
  GAGTAATTCA TGACAGTGGA ATTAATTTTG CATTTTCCAA TAGACTGAGG TTGGTAGCCT
  TGGATAAAAT ACCCATAAGC TTATAAGGCA GATTAAACCT TGTCGTTTGT GGTCAAGCCT
  AACGTTCGCT AACTGCTTGT CAACTGTGCA TCCCTCTCTA GTCTTTTATA GAAAACAGCA
  AGTTCTTTGA ACAGTATGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52118978	NES15249084	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs45868976					SNP	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52118978	NES15249084	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5311743 () rs orientation: reverse

Symbol	Name	Function Class
Rr222920	regulatory region 222920	854 bp distal
Rr384081	regulatory region 384081	436 bp downstream
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates