rs45870059 SNP Detail

Summary

• ID
  rs45870059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTCGGC GCAATCAAGT
  CCCTCCTTCG TGAAGGCTCA GTGCGCCGGC GCAGAGCCGA AAAGTGAGGC GGCCGGCCGG
  CGCCGCACTA CGCATGCGCG GGCCTTGGCG GCGGGACTTT TTGGCTGGTT TGGCGGGTTG
  CTGATATGTG TCTAAAGTTC TCATTGGATG TGGCTGAGCC TGGCGGCGTT TGCCAGAGTA
  Y
  GGTTTTGTGG TGTGGTCTTA GAGAGTTAGT CCCACCTCTT CAATCTAAGC AGTGGGGTGG
  CGGGACAGGG GTGGTTTCAA TCAGCACCCG TGCCCTTGCC AGCCCAGGGT TGGTTACCCT
  TGGTGGAACA GGCCACCCAG ACAGGGCTGG ACCAATTGCT CTACGGTCAT AGGTCATCTC
  CATCACCATT TCTCAGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148343946	ENSMUSSNP1567167	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320627899	CHEV_2_174298797	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45870059					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	355 bp upstream
Rr397557	regulatory region 397557	118 bp downstream
Rr572132	regulatory region 572132	1980 bp distal
Rr572133	regulatory region 572133	409 bp distal
Rr572134	regulatory region 572134	673 bp distal
Rr572135	regulatory region 572135	306 bp distal
Rr572136	regulatory region 572136	278 bp distal
Rr572137	regulatory region 572137	101 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	360 bp upstream
Tssr28036	transcription start site region 28036	277 bp upstream