rs45871767 SNP Detail

Summary

• ID
  rs45871767
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148890498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGA GCGGGAGAAG CCGGGGAGCA
  G
  GGCCTGGGAG GGGAGGGGGC GGCCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148019845	ENSMUSSNP2223826	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321423042	CHEV_4_148180150	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45871767					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148890498 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	within coordinates
Cpgi15311	CpG island 15311	within coordinates
Rr100549	regulatory region 100549	within coordinates
Rr407230	regulatory region 407230	1059 bp distal
Tssr1379	transcription start site region 1379	1700 bp downstream
Tssr40301	transcription start site region 40301	1668 bp downstream
Tssr40302	transcription start site region 40302	1602 bp downstream
Tssr40303	transcription start site region 40303	1547 bp downstream