rs45875155 SNP Detail

Summary

• ID
  rs45875155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24926726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC GAAGGCATAT CCAGTGTGGA
  Y
  GCTGGCAGCT GGCAGTAGAA CGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60552605	NES16570762	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C		C	C		T	C	T	T		C
ss145361745	ENSMUSSNP6825500	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C
ss325333146	CHEV_17_24844697	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45875155					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552605	NES16570762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24926726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	within coordinates
Rr405091	regulatory region 405091	within coordinates
Rr523395	regulatory region 523395	103 bp distal
Rr523396	regulatory region 523396	within coordinates
Rr523397	regulatory region 523397	908 bp proximal
Rr523398	regulatory region 523398	1110 bp proximal
Tbl3	transducin (beta)-like 3	99 bp upstream
Tssr146772	transcription start site region 146772	142 bp upstream
Tssr146773	transcription start site region 146773	91 bp upstream