rs45877489 SNP Detail

Summary

• ID
  rs45877489
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57173801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA GAGAGAACGG CCAGGCGTGA
  H
  GAAGCCCAGG TACCTGCATG GTAAG                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss60467747	NES16458720	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	C		C		C
ss325201089	CHEV_16_57353551	CHEVERUD	SCREENING_POP	f	SNP								T		A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs45877489					SNP	T	T	C	C	T	C	C	T	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60467747	NES16458720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57173801 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	within coordinates
Tssr138825	transcription start site region 138825	656 bp downstream
Tssr138826	transcription start site region 138826	613 bp downstream
Tssr138827	transcription start site region 138827	436 bp downstream
Tssr138828	transcription start site region 138828	403 bp downstream
Tssr138829	transcription start site region 138829	321 bp downstream
Tssr138830	transcription start site region 138830	183 bp downstream
Tssr138831	transcription start site region 138831	154 bp downstream
Tssr138832	transcription start site region 138832	130 bp downstream
Tssr141601	transcription start site region 141601	275 bp upstream
Tssr141602	transcription start site region 141602	241 bp upstream