rs45877571 SNP Detail

Summary

• ID
  rs45877571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18121138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAGTTTGA TGGGAAACTG GCTCCATCAC CCTTATTACT
  GAAGCTTTGT TCTTTCTTGA CCAATAGCCC ATGGTTACCA CACAGCAACT GTGAAAATGC
  Y
  GAGGCATGTG TGTTTAGGGC ACAATTTAGA GGGTGAAGAA AATCAGGACA GTCTTAGGGT
  GCACTTCTGC TCTATGAGGC CCTGTTGCAC AATTTATGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60545642	NES16557364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45877571					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545642	NES16557364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18121138 () rs orientation: forward

Symbol	Name	Function Class
Rr329600	regulatory region 329600	1138 bp distal
Rr336961	regulatory region 336961	1218 bp distal
Rr343850	regulatory region 343850	169 bp distal
Rr343851	regulatory region 343851	within coordinates
Tssr142835	transcription start site region 142835	1244 bp downstream