rs45878060 SNP Detail

Summary

• ID
  rs45878060
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGTCCA ATACAAAACC
  AAACAAAAAC AAAACAAAGA CAACAAATAA AAAACAACAC TAGCCAAAAT AGCAAGACCA
  GAACACGAGG CTAGAGGGGA ATTGTACCAA CACAAACATC CTCAGAAACT GAGCATTCAC
  GGTCTGGCCG CAGAAATCCC CGCCATTCAC AACCAACCTG GGATGGGTTT ATGATGCCAG
  S
  TACATGGAAG GCTGAGGCAG GAGGATTCTA AATTTAAGGC CAGCTGGGGC AACTGACTGA
  GACCCTATCT CACAATAAAA AGTAAACGGA GACCTGAGAA TTCAGCCTCG TGGTAGGGAG
  TCTGCCTAGC ATGCCTTTGA AGCACTAAAT TCAATCTCTA GCATCGAAGA AAAGTCATTA
  ACGTTCCTTT GCCTCCTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716413	ENSMUSSNP2893347	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss323830214	CHEV_11_99853863	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45878060					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	992 bp proximal
Krtap17-1	keratin associated protein 17-1	685 bp downstream
Tssr110721	transcription start site region 110721	1443 bp downstream