rs45878650 SNP Detail

Summary

• ID
  rs45878650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77872424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTA CTACACTGGG GATGCAGGGA
  Y
  AGTAGTTCAT GTCCAGTTGT CTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63193970	NES17463833	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45878650					SNP	C	T	T	T	C	T	C	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63193970	NES17463833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77872424 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	1855 bp downstream
D18Mit47	DNA segment, Chr 18, Massachusetts Institute of Technology 47	1352 bp proximal
Rr347429	regulatory region 347429	1224 bp distal
Rr347430	regulatory region 347430	377 bp proximal
Rr347431	regulatory region 347431	1777 bp proximal
Rr350215	regulatory region 350215	424 bp distal
Rr355616	regulatory region 355616	1977 bp proximal
Rr356493	regulatory region 356493	within coordinates