rs45878784 SNP Detail

Summary

• ID
  rs45878784
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49012489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTAAGCT AAGCTGAAAC CTGAAGATGT TGCATGAGCT
  TTCTCTGGGG AAATGTCAAC AAATGCCTAC TCACCCAAGC TAAGGCACCA ACCACAGCCC
  T
  AACTAGGGAC TCCATTTGAG TCTAACTTGA TGAACCAGTG CGTTTATCAA GCTCTGTTAC
  AGAGGGCAGG TGAGGGGGTT ACTTACAGCA GCGCAGGTG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145722396	ENSMUSSNP5450853	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325410147	CHEV_17_48844786	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45878784					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49012489 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	851 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	851 bp proximal
Rr392702	regulatory region 392702	1493 bp upstream