rs45879054 SNP Detail

Summary

• ID
  rs45879054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135637779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA GGGCTGTGAA CAGTTGGCTC
  R
  CGGTGTGTTT GAAGCCTTTG CTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60804039	NES16474659	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A	A	A	A		A	A	A	G
ss145543511	ENSMUSSNP1398872	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss319992555	CHEV_1_137606618	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs45879054					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60804039	NES16474659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135637779 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	within coordinates
Rr419241	regulatory region 419241	1357 bp distal
Rr419242	regulatory region 419242	1101 bp proximal
Tssr8966	transcription start site region 8966	1331 bp upstream