rs45879298 SNP Detail

Summary

• ID
  rs45879298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:14184888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGTCT AGTGTCAGTC
  CAGCAGCCAG AATGCTTGCT TTTGTCTTTT ATTCTTTTGT AGTGCTGGGG ATAGGATCTA
  GAGCCTGGCA TTAGCTAGGC TAACACTTCC CTGTAACTGC AGTCCTAGCC CCGAGGAATC
  CTGTTAAGAG AGAGCACAGA CCCTGCCCTT GCTATGCTCA GCACCCTTCA GCGACTCCCC
  R
  GTCCTGGAAC ATCTGACCCT GCTCTCTCCT GTCCTAGTCA CTGCAGTCAT GGGGCTCCCC
  AGGCATCTTT CCCTGACCCC TGCCACTCTT GCATGCCCAG TTTTCTGATT CTACCTCATC
  GTTCTTAATT TTTCTCATAT ATCAAAAAGT TTACTTAGTT CCCTTTTTTT GTGTTTGTGA
  CTCTAATCCT AGTATCTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52597254	NES15697368	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45879298					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52597254	NES15697368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:14184888 () rs orientation: forward

Symbol	Name	Function Class
Abcc1	ATP-binding cassette, sub-family C member 1	within coordinates
Rr325829	regulatory region 325829	1914 bp proximal
Tssr137194	transcription start site region 137194	1281 bp downstream