rs45880403 SNP Detail

Summary

• ID
  rs45880403
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56298269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATATAA TAGAAGCCTT
  ATTTAGTAAA TGAGATTAGA ACTTTCATGG ATCAGTTTCC TAATGATGTC TGGTTCTGTT
  TTCTGGCTTT CATTTTTTTG TTGTTGTTGT TGGGTGCAGG TTTCCTGGCT TGTTTTCAGT
  TTTGTGTATT GTTGTTGCTT AGGTTTAAAA GTAGAAAAAA AAAAGTAGAA AACATCCTCT
  W
  TGTGCCTTGG TAGTAGCCAA CGTCCTCATC CCCCACTGGA GCTGCCCGCC TTAGATTCTA
  TCCCAAGAAC CTGGGTACTG GCAGGAAGAG GAGGGGGGAG TCATCTCTCC TACTCTCGTG
  CCCTCAGGGC TAGATCTCCC ATGATGCTCA GGTGAGGGGT GGAGCCAGTT CTGCACAGCC
  CTCAGACATC AATATGCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437192	NES15406618	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45880403					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437192	NES15406618	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56298269 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	1759 bp upstream
Gm25917	predicted gene, 25917	831 bp downstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	732 bp proximal
Rr260934	regulatory region 260934	669 bp distal
Rr267727	regulatory region 267727	133 bp proximal
Tssr113509	transcription start site region 113509	1663 bp upstream
Tssr113510	transcription start site region 113510	1704 bp upstream
Tssr113511	transcription start site region 113511	1744 bp upstream
Tssr113512	transcription start site region 113512	1766 bp upstream