rs45881382 SNP Detail

Summary

• ID
  rs45881382
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26835092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC TCGAAGTGGG AGGGAAAGGT
  C
  GAGGCCTGGG GTTTGGATGT GGACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139210852	ENSMUSSNP3737099	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324569409	CHEV_14_27926321	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45881382					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26835092 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	1764 bp upstream
Cpgi6253	CpG island 6253	1390 bp proximal
Rr287890	regulatory region 287890	492 bp distal
Rr287891	regulatory region 287891	509 bp proximal
Rr296929	regulatory region 296929	1108 bp proximal
Tssr124726	transcription start site region 124726	1712 bp upstream
Tssr124727	transcription start site region 124727	1760 bp upstream