rs45882334 SNP Detail

Summary

• ID
  rs45882334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182782025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACCTTCAATA
  GTTAAAATAG AAGGCGTAGC CAAGTAGTAG AGGGCAAAAT GACAGCCAGC TTCACCCCTC
  AGCATCATAT CTTCAAGATT TGGCACAGAT CAAAGAGCAC AGGCAAGAAC AGAAGTAACT
  GCCCCGATCA GGACTTGCTG CGCTGGCCGT GTGTACAGTG CATCAGGATA GGATCTAGGC
  Y
  GCCTTCCCTG GGTCAGTGCA GGCCTATGTT ATCTCGATGG ACAGTTAGGG GTAGCTACAA
  AAATCACAAC AGGCCCTCTG CCTCCTGTGC TGGGCTCCAT GATAGCCAAT ACCTACCGTC
  TGCCCCAGCT CTACTTTCTT TCCTACCTCA GTTACAAGGT CATTGCAGCA GAGATAGAGG
  TCTCCTCCCT GGCAAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60352269	NES15858468	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs45882334					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352269	NES15858468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182782025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	275 bp proximal
Gm69962	predicted gene, 69962	710 bp upstream
Tlr5	toll-like receptor 5	328 bp upstream
Tssr10570	transcription start site region 10570	310 bp upstream