rs45882664 SNP Detail

Summary

• ID
  rs45882664
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGGACA CATTAAGCTT
  CGAAGGAAAA GCTGTTGATG AATTCACTTC AGGAGACCAC ACTGGCAGTA ACTTTGGGCT
  TAACTTTAAG GTCTATATTC AGATCTCTGA GGTTTGATAA GGACACTCCC AACGCCCAGG
  CACTCTGAAT GTACCTCAGC CTGAATTAAA CCATTATCAT GAACAATGCC TGGTCTATCC
  A
  TTTCCCCTTC ATCCTCAGTA TTCCTCCTTT AATCCCATTT AGATTTTGGA TTACTGGGCT
  GTCCCTGTCA CACCCTGGGA GTCTAAGCTC ATGTGCCCTC ATGTGCTTTC CTCTGAACCT
  GCAATAGGTG GTAGGAAAAC CTCAAATCCT TTTGGGATTT GAGCTAGTTC CACAATTAGC
  ATGAATACAT GATTTTATTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148982869	ENSMUSSNP576764	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs45882664					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553742 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	806 bp upstream
Rr410075	regulatory region 410075	332 bp proximal
Rr410076	regulatory region 410076	791 bp proximal
Tssr65	transcription start site region 65	913 bp upstream
Tssr6477	transcription start site region 6477	795 bp upstream
Tssr6478	transcription start site region 6478	860 bp upstream
Tssr6479	transcription start site region 6479	889 bp upstream
Tssr11438	transcription start site region 11438	633 bp downstream
Tssr11439	transcription start site region 11439	1865 bp downstream
Tssr11440	transcription start site region 11440	1875 bp downstream
Tssr11441	transcription start site region 11441	1893 bp downstream
Tssr11442	transcription start site region 11442	1909 bp downstream
Tssr11443	transcription start site region 11443	1940 bp downstream