rs45883720 SNP Detail

Summary

• ID
  rs45883720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140426067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGGAT CTGCAGGTTG
  ACCTGGGAGT GCTAGAAAGA CAAGGACAGG AGATCAAGTC CCTCCCTCGG CATTGTATCC
  CCTTTGCAAC ACAGGGCTGA CTAGAGCAGA GGATGACAAT GAGTTTTTCA TGGAATTCCT
  GCAAACACTC CTGGTGGGGA CCCCGGAAGA ACTCTACGAA GGGCCCCTGG GCAAGTACAA
  Y
  GTCAATGACA TGGCCAAGTC AGCGCTGAGC GAGCTCAAGT CCTGCATCGA TGAACTACAG
  CCTGTGCATA AGGAGCAACT GGTCAAGCTG CTGGTAATCG GGCTGGGACT CCCATCCCCG
  AATGTTTGCA GTTCTTCCGA GACCCTCCTG GTGCTGGATC ACCAGTCCTC CCCGATCCCC
  AGATCTCCAT CAGCCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072237	NES16047741	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45883720					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072237	NES16047741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140426067 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	465 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	1762 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr400701	regulatory region 400701	1015 bp downstream
Rr657754	regulatory region 657754	1138 bp distal
Rr657755	regulatory region 657755	597 bp distal
Rr657756	regulatory region 657756	736 bp distal
Rr657757	regulatory region 657757	375 bp distal
Rr657758	regulatory region 657758	201 bp distal
Rr657759	regulatory region 657759	1761 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	within coordinates
Tssr69847	transcription start site region 69847	587 bp downstream
Tssr69848	transcription start site region 69848	1600 bp upstream
Tssr69849	transcription start site region 69849	1616 bp upstream
Tssr69850	transcription start site region 69850	1630 bp upstream
Tssr69851	transcription start site region 69851	1647 bp upstream
Tssr69852	transcription start site region 69852	1662 bp upstream
Tssr69853	transcription start site region 69853	1689 bp upstream