rs45885077 SNP Detail

Summary

• ID
  rs45885077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161627139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT AGAGATATTG GCTCATTTTT
  R
  GTGAGCAGTT GTTCGGGTTA CAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60335599	NES15842436	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G	G	G		A	G		A	A		A
ss145922730	ENSMUSSNP2836081	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss320081685	CHEV_1_163729701	CHEVERUD	SCREENING_POP	f	SNP												G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs45885077					SNP	A	A	A	A	G	G	G	G	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335599	NES15842436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161627139 () rs orientation: forward

Symbol	Name	Function Class
Rr421849	regulatory region 421849	304 bp distal
Rr421850	regulatory region 421850	275 bp proximal
Rr421851	regulatory region 421851	1824 bp proximal