rs45885180 SNP Detail

Summary

• ID
  rs45885180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138153361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAGTAC GGAGGGTAAA
  GGAATGTGCT AGGAACTACC AGCAAAGACC ATCACATACT GTCTTTTCAG TACACCCTAA
  GAGAGCTGAA ATGGACTAAG GTTCTCTGTG TTCAACTAGG TTCTCAATGT TTTAGCCAGC
  TAATGCACTG GACATACTCG GCCACTTCTG CAGGGAGCCG GCCCCAGCAT GTCCACGAAA
  R
  GGTATCAGTC AGTAAGCTTA AAAAAAAAAA CAAAAAACAA AACAAAAAAA CCCTATTCAT
  AGCCATAGGA CATGAGATCT TGGTGAGGTT ACGGAGGACC CGAGTTCGCA CCTCCTCCCA
  AGCCCTAGTT CTCACTGCGA CCCAGAACTA CTGTCTGGTT TTCCGATCCA ATTAAGGAAA
  AACTTCCTTC TCCTGCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847391	NES16002779	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45885180					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847391	NES16002779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138153361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16854	CpG island 16854	68 bp proximal
Rr399442	regulatory region 399442	585 bp upstream
Tssr54073	transcription start site region 54073	595 bp downstream
Zfp113	zinc finger protein 113	within coordinates