rs45888001 SNP Detail

Summary

• ID
  rs45888001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142605810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTAACTG CTCAAAGATT
  TAAGAACATG GAGTGACCTG GAAAAGGCTG AGTCTTGGGA ACTGGTCCTT CCATGGTTCC
  CAGTGAGTCT AATGAAGCAG CCCCATTGCC CTTCAGTTTG GGGAAGGGAA TGCCAAGATT
  TCACAGGAAT ATCATCTATG ATGACAGCAG CCATTCCTCA CCCGGGAAGG AAGCACCTCT
  R
  CCCTCTGAAT CTTTCCTCAC TTCCTTATTA ATCCCAGCTT TCAGGGAACC AGCTAGAGGA
  TGGAGGATGG ACTCTTGGAA GGCACAGCCA GGATGGCATG AATATTTGAA GGTGCCCCTG
  AGGGTTCTCG AGCCTAAAGA CTGGCTAAAG ACATTGGGTA CACTATTGAC CTTCCCAAAT
  GCAGCCTCCA GAACTGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473929	CHEV_7_150237978	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45888001					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142605810 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	677 bp upstream
Cpgi19971	CpG island 19971	355 bp proximal
R74862	expressed sequence R74862	within coordinates
Rr167007	regulatory region 167007	within coordinates
Rr381609	regulatory region 381609	1203 bp downstream
Rr381610	regulatory region 381610	1411 bp upstream
Rr400727	regulatory region 400727	484 bp upstream
Tssr70268	transcription start site region 70268	679 bp upstream
Tssr70269	transcription start site region 70269	703 bp upstream
Tssr70270	transcription start site region 70270	1401 bp upstream
Tssr70271	transcription start site region 70271	1444 bp upstream
Tssr70272	transcription start site region 70272	1481 bp upstream
Tssr75917	transcription start site region 75917	1306 bp downstream