rs45888282 SNP Detail

Summary

• ID
  rs45888282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122582346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAGGTC CTTAGTTCAA
  TTCCCAGCAA CCACATGGTA GGTTACAACC ATCTATAATG GGATCTGATG CCCTCTTCTG
  GTGTGTCTGA AGACAGCTAC AGTGTACTTA TATACAAAAA ATAAATAAAT AATTCCTTTA
  AAAAAAGGAT AGGAAAGTAT CAAACACGTG TACACATAAT CCAATATCTA TTCAAACACC
  Y
  TAACAAAATC TTGCTGTAAT AATTCAGTTG AAGTAAATTT ATTAAGAAAA CCCCAGGAAG
  CCAGACGGTG GTGGCGCACA CCTTTAATCC CAGCACTTGG GAGGCAGAGG CAGGCAGATT
  TCTGAGTTCG AGGCCAGCCT GGTCTACGGA GTGAGTTCCA GGACTGCCAG GATTACACAG
  AAAAAAGAAC TGGCTCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938745	NES16186259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45888282					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938745	NES16186259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122582346 () rs orientation: forward

Symbol	Name	Function Class
Gdf3	growth differentiation factor 3	16 bp downstream
Rr380021	regulatory region 380021	1333 bp upstream
Rr399900	regulatory region 399900	976 bp downstream
Rr638224	regulatory region 638224	115 bp distal
Rr638225	regulatory region 638225	177 bp proximal
Rr638226	regulatory region 638226	285 bp proximal
Rr638227	regulatory region 638227	1455 bp proximal
Tssr62927	transcription start site region 62927	974 bp upstream
Tssr62928	transcription start site region 62928	1159 bp downstream