rs45888298 SNP Detail

Summary

• ID
  rs45888298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44661544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGAGCC TTTTATAAAG
  CAGGAGATGC TGAAATTCCT CCTTTCTATG TTTGTTGCCG CAGAGGCTGG CCTCTGGCTC
  AAACTCCTTG GGCCGTTTGT GTTAACAGTA GTGGTTGGGT ACCTCTCTCA GAGAGTGTGG
  CGACTGGTGG TCAGCAGTGG CCGGAAACTC AAAGGGGGAG CTGAAGCTGT TTCTTACAGC
  Y
  CAGCGATCTG TTCATCTTCC AGCAGCTAAG AGGGGAAGGA ACAAGCTAGA ATTTTTATTT
  CTTAAAGATT TATTTTATTT CCTAAAGATC AGGAAACTTT TCAACCATGC AGATTCCTTA
  TTGGTCAAAC AATGTCCTTT TTTTTTTTTT TAAGGTGTGG TCATAATTTC ATTTTCATTT
  CTCTTGGTGG AGAAAACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61784004	NES17519048	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45888298					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61784004	NES17519048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44661544 () rs orientation: forward

Symbol	Name	Function Class
Gm40930	predicted gene, 40930	within coordinates
Gm47792	predicted gene, 47792	1390 bp upstream
Rr271968	regulatory region 271968	1457 bp proximal
Rr276099	regulatory region 276099	1456 bp proximal
Rr283665	regulatory region 283665	1345 bp distal
Rr283666	regulatory region 283666	486 bp distal
Rr403740	regulatory region 403740	642 bp downstream