rs45888418 SNP Detail

Summary

• ID
  rs45888418
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20514296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAATCAT GGGTTTGTTG
  GGAGTGATAG CCCAGTTGAG ATTGGTGAGA GGAAAGAATC CTGGGGAGAA GGAGAGTGAG
  AGGGGGCCAG TGCTGGTGGG CAAATTTCAT GCACTTTTCA AGGGTTGAGA TGCGGGCGGA
  GAGGTCAGGG GTTACTCATA TTTGGGTATG AGTAACGTAA GTTCTGATGG CAAAATAGTT
  S
  TAGAGGAAGG TGTCCTTAGG GATGCCACAG TCAGTTGTGG GATAGGGGGT TTCAGGAGAG
  TTATGTGCGT GAACTCAGAT TGTCTGCGAG ATGGGGGAGG GGTAATAAAA AATGACACGG
  CAGCACGGTG AAAATGGCAG TCTTGGTAGA AGTGGGAATG CAGATGAACA CCGTTCCCTC
  CCGACTCCTC AGTGGCTTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60198408	NES15711488	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45888418					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60198408	NES15711488	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20514296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	1790 bp distal
Cpgi8084	CpG island 8084	109 bp proximal
Fam131a	family with sequence similarity 131, member A	within coordinates
Rr512910	regulatory region 512910	1206 bp distal
Rr512911	regulatory region 512911	628 bp distal
Tssr137489	transcription start site region 137489	537 bp downstream
Tssr137490	transcription start site region 137490	517 bp downstream
Tssr137491	transcription start site region 137491	455 bp downstream
Tssr137492	transcription start site region 137492	633 bp upstream