rs45888890 SNP Detail

Summary

• ID
  rs45888890
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37568465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT ATCTTTGTGG TAGTTTGTGG
  T
  TCCACAAGGA AATACTCTTA ATAGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134807210	ENSMUSSNP3754003	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320710559	CHEV_3_37413238	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45888890					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37568465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575494	regulatory region 575494			1223 bp proximal
Rr575495	regulatory region 575495			1307 bp proximal
Rr575496	regulatory region 575496			1412 bp proximal