rs45889078 SNP Detail

Summary

• ID
  rs45889078
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aactccagc taccagggta ctgatgccct
  cttcacaaat atacatgcag gaaaaatatt acatataaaa caaaTTTTAA ATTGTAATCA
  TATTTAATAA TAGTGAAAAC ACTTAAAACA AATTTTAACT ATTATCAGTG ACATTACACA
  M
  GGGAACTTTT TTTTTTtttt ggtttttcaa gacagggttt ctctgtatag ccctggttgt
  cctggaactc actttgtaga ttcagaaatc cgcctgcctc tgcctaccaa gtgctgggat
  taaaggtgtg tgccaccacg cccggcCTGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135864354	ENSMUSSNP5634472	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss320954465	CHEV_3_127181277	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45889078					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272008 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1820 bp downstream
Gm43355	predicted gene 43355	1076 bp downstream