rs45889392 SNP Detail

Summary

• ID
  rs45889392
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:21349878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAACGCC CTCTTTTGTC
  ATCTGCAGTC TCTGGGTGTG CATACGTGGT GTGTGTGCGT GATGGCACAG CTTCATGCAT
  ACAACATACA GACAAACAAG CAACTTCTTA GAAAAGCATG AGGGGCATTT AGAGGTTAGT
  GTGAGTGTTG GGGCTATACC TGGAAACACC GTGCTGTCCC TTTCCTGTGT GAAGAGCAGA
  S
  TCATCGTATG GCAGTGAGTG CAGCCCCAAA TACCACCAAG TGGTAAGACA CAGGAAGGAG
  GTTATGGGCT GCATGGCTGC ATGGACTCTT AGAGAACTGG TACATAAAGC AATTCTCAAA
  GTGTTTTTCC TCATTTGCTT TAAATCTTCA GGTCCTTTTA GAATTGCTGC AGGCCGGAGG
  CATAGTTCAA TTTGAAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63676840	NES17069181	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45889392					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63676840	NES17069181	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:21349878 () rs orientation: forward

Symbol	Name	Function Class
D16Mit208	DNA Segment, Chr 16 Massachusetts Institute of Technology 208	532 bp distal
Vps8	VPS8 CORVET complex subunit	within coordinates