rs45889667 SNP Detail

Summary

• ID
  rs45889667
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94523226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCCTTT CTGATGTAAA
  TGTATCCATG TTAGAGTTCA GCTCTCAAGT GGCTGCCAAA GGCTCAGAAG TTAAGGCTTT
  AGCACGAGCG TGGGACATGG GCGAGGGGCT CTGGTACTTT CAGGAGGCGA GGGCTGCTGG
  AAGGTCTGTG ATCCTTTTGG AACTCCCGCT CAGAGCCCAC TGGCTGTGCC TCTGATAGGG
  M
  CCTGCTGTCT TTTGGGAAAG GCACAGACAG CATAGCGCTC GGGCTATGCT GGGAAGTGGG
  TGGGAGAGGA GAGGAGCAAG AGAAAGGTAA GGTCAGGAAC CAAGAGAAAG CTTATCAGCT
  CCCGGACTCT AGAATCACCT GGGAGATGGG TCTCTGCGTA CACCTGTGGG GCACTCTTGA
  TGGTGCTCAG TGAAGTGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60514134	NES16533888	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45889667					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514134	NES16533888	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94523226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8506	CpG island 8506	1834 bp proximal
Gm41505	predicted gene, 41505	within coordinates
Gm41507	predicted gene, 41507	960 bp downstream
Rr1836	regulatory region 1836	787 bp proximal
Rr520192	regulatory region 520192	295 bp distal
Rr520193	regulatory region 520193	within coordinates
Rr520194	regulatory region 520194	1488 bp proximal
Tssr139566	transcription start site region 139566	467 bp downstream
Tssr139567	transcription start site region 139567	399 bp downstream
Tssr139568	transcription start site region 139568	376 bp downstream