rs45890520 SNP Detail

Summary

• ID
  rs45890520
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC CCTGAGCAAG ACTGGTCCTC
  A
  CTCCTGGGCC CAGAGTCAAT ACTTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132512939	ENSMUSSNP3778643	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45890520					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687383 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	385 bp distal
Rr453905	regulatory region 453905	331 bp distal
Tssr3631	transcription start site region 3631	1789 bp downstream
Tssr3632	transcription start site region 3632	1289 bp downstream
Tssr3633	transcription start site region 3633	218 bp downstream
Tssr103989	transcription start site region 103989	1742 bp downstream
Tssr103990	transcription start site region 103990	1330 bp downstream
Tssr103991	transcription start site region 103991	1257 bp downstream
Tssr103992	transcription start site region 103992	1239 bp downstream
Tssr103993	transcription start site region 103993	765 bp downstream
Tssr103994	transcription start site region 103994	683 bp downstream
Tssr103995	transcription start site region 103995	514 bp downstream
Tssr103996	transcription start site region 103996	464 bp downstream
Tssr103997	transcription start site region 103997	294 bp downstream
Tssr103998	transcription start site region 103998	149 bp downstream
Tssr103999	transcription start site region 103999	759 bp upstream
Tssr104000	transcription start site region 104000	871 bp upstream
Tssr104001	transcription start site region 104001	901 bp upstream
Tssr104002	transcription start site region 104002	927 bp upstream
Tssr104003	transcription start site region 104003	1000 bp upstream
Tssr104004	transcription start site region 104004	1026 bp upstream
Tssr104005	transcription start site region 104005	1050 bp upstream
Tssr109976	transcription start site region 109976	123 bp upstream
Tssr109977	transcription start site region 109977	788 bp downstream
Tssr109978	transcription start site region 109978	816 bp downstream
Tssr109979	transcription start site region 109979	868 bp downstream
Tssr109980	transcription start site region 109980	1056 bp downstream