rs45890841 SNP Detail

Summary

• ID
  rs45890841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43210244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTAGCTGG CCTGGAACTC ACTGTATAAA CCAGGCTGGT
  CTGGAACTCA CAAAAATCTG CTTACCTCTG CCTTCCAAGT GCTGGGATTA AGGTTGTGTT
  Y
  CACCATGCCT GACCTACAAT GTTTTTCAGG GTATCTGTGG TTCAGCCTCC TGATGCATGG
  GGTGGTTTTA TGGTATGGAC AGGGCAACTT CCTCAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149076602	ENSMUSSNP5188952	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45890841					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43210244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18937	CpG island 18937	1304 bp proximal
Gm44818	predicted gene 44818	499 bp upstream
Rr645990	regulatory region 645990	1056 bp proximal
Rr645991	regulatory region 645991	1447 bp proximal
Tssr66014	transcription start site region 66014	1439 bp upstream
Tssr66015	transcription start site region 66015	1471 bp upstream
Tssr66016	transcription start site region 66016	1508 bp upstream
Zfp175	zinc finger protein 175	1436 bp upstream