rs45892972 SNP Detail

Summary

• ID
  rs45892972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT GGACTTTGCT TTGCCCAAAT
  R
  CAGCTGTGGA GCCCAGAATG GCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148471722	ENSMUSSNP4759719	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss322116780	CHEV_7_19848648	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45892972					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997224 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	1576 bp proximal
Tssr70882	transcription start site region 70882	1240 bp upstream
Tssr70883	transcription start site region 70883	1170 bp downstream
Tssr70884	transcription start site region 70884	1511 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates