rs45892981 SNP Detail

Summary

• ID
  rs45892981
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:158727623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGGGCTATA GTCCATCATT GAGATGAAAC CAAGGCAGCA
  AGAAGCTTGA AGCAGCCAAT CATGTCCACT AATAAGAGCA AAGGGAATAA ATGTAGTTTG
  K
  GTTCTCTACT ACAATACAGT CCAGGATCTC CTGCCTAGAG ATGGATGCCA TCTACAATGG
  GTGACTTTTG CCACCTCAAG TGTAATCAAG ATAATCCCCC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134519952	ENSMUSSNP5716494	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45892981					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158727623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr694730	regulatory region 694730			1234 bp distal
Sh3kbp1	SH3-domain kinase binding protein 1			Intron
				Noncoding-Transcript-Variant
Tssr162527	transcription start site region 162527			1922 bp downstream
Tssr162528	transcription start site region 162528			1757 bp downstream
Tssr162529	transcription start site region 162529			1725 bp downstream
Tssr162530	transcription start site region 162530			1708 bp downstream
Tssr162531	transcription start site region 162531			1682 bp downstream
Tssr162532	transcription start site region 162532			1651 bp downstream
Tssr162533	transcription start site region 162533			1633 bp downstream
Tssr162534	transcription start site region 162534			1594 bp downstream
Tssr162535	transcription start site region 162535			1570 bp downstream
Tssr162536	transcription start site region 162536			1522 bp downstream
Tssr162537	transcription start site region 162537			215 bp downstream