rs45893711 SNP Detail

Summary

• ID
  rs45893711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTA GTCACTGTCC TGTGTTTTAA
  Y
  CTCCATCCCC AGGTCCAAAG CATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145709016	ENSMUSSNP3189666	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325406558	CHEV_17_47867535	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45893711					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041511 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	123 bp proximal
Tssr5147	transcription start site region 5147	1835 bp downstream
Tssr5148	transcription start site region 5148	1273 bp upstream
Tssr5149	transcription start site region 5149	897 bp upstream
Tssr145004	transcription start site region 145004	1844 bp downstream
Tssr145005	transcription start site region 145005	1823 bp downstream
Tssr145006	transcription start site region 145006	1794 bp downstream
Tssr145007	transcription start site region 145007	1762 bp downstream
Tssr145008	transcription start site region 145008	1741 bp downstream
Tssr145009	transcription start site region 145009	1713 bp downstream
Tssr145010	transcription start site region 145010	1331 bp downstream
Tssr145011	transcription start site region 145011	1312 bp downstream
Tssr145012	transcription start site region 145012	1295 bp downstream
Tssr145013	transcription start site region 145013	1243 bp downstream
Tssr145014	transcription start site region 145014	449 bp downstream
Tssr145015	transcription start site region 145015	434 bp downstream
Tssr145016	transcription start site region 145016	430 bp downstream
Tssr145017	transcription start site region 145017	12 bp upstream
Tssr145018	transcription start site region 145018	24 bp upstream
Tssr145019	transcription start site region 145019	55 bp upstream
Tssr145020	transcription start site region 145020	76 bp upstream
Tssr145021	transcription start site region 145021	102 bp upstream
Tssr145022	transcription start site region 145022	134 bp upstream
Tssr145023	transcription start site region 145023	161 bp upstream
Tssr145024	transcription start site region 145024	272 bp upstream
Tssr145025	transcription start site region 145025	616 bp upstream
Tssr145026	transcription start site region 145026	872 bp upstream
Tssr145027	transcription start site region 145027	1805 bp upstream
Tssr145028	transcription start site region 145028	1833 bp upstream
Tssr145029	transcription start site region 145029	1874 bp upstream
Tssr148459	transcription start site region 148459	1785 bp upstream
Tssr148460	transcription start site region 148460	1733 bp upstream
Tssr148461	transcription start site region 148461	1721 bp upstream
Tssr148462	transcription start site region 148462	1678 bp upstream
Tssr148463	transcription start site region 148463	1305 bp upstream
Tssr148464	transcription start site region 148464	1220 bp upstream
Tssr148465	transcription start site region 148465	459 bp upstream
Tssr148466	transcription start site region 148466	425 bp upstream
Tssr148467	transcription start site region 148467	43 bp downstream
Tssr148468	transcription start site region 148468	74 bp downstream
Tssr148469	transcription start site region 148469	164 bp downstream
Tssr148470	transcription start site region 148470	1841 bp downstream
Tssr148471	transcription start site region 148471	1860 bp downstream
Tssr148472	transcription start site region 148472	1876 bp downstream
Tssr148473	transcription start site region 148473	1893 bp downstream
Tssr148474	transcription start site region 148474	1912 bp downstream