rs45896063 SNP Detail

Summary

• ID
  rs45896063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121266239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT TAGGATAAAG GCATGGGCCA
  Y
  TAGATCTAGG TCGGTAGTAA ATACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147386063	ENSMUSSNP4311609	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320483153	CHEV_2_121261494	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45896063					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121266239 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	617 bp distal
Rr563822	regulatory region 563822	696 bp distal
Tssr19766	transcription start site region 19766	1747 bp downstream
Tssr19767	transcription start site region 19767	153 bp upstream
Tssr19768	transcription start site region 19768	597 bp upstream
Tssr19769	transcription start site region 19769	1849 bp upstream