rs45896621 SNP Detail

Summary

• ID
  rs45896621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62721099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACCACA CATAAATTCT
  TTAAAACAGA CATCAAAACC CAGGAAGCCA TAAACTGTAG CATCTGAGAT TCTTTTTAAT
  TATTAGCGGC TGGTCTGGAA GCATTAAGCT TCACTATACC CATAAATACC TAATTAACTA
  TATTCAGTTG TGTGTAACTG AATCTAAATA TACTCTCCAA ATTGTTTTTG CCTCAAGAAA
  Y
  CAATACCTGC CGGGCGTGGT AGGGCACTCC TTTAATCCCA GCACTCGGGA GGCAGAGGCA
  AGAGGATTTC TGAGTTCGAG GCCAGTCTGG TCTACAAAGT GAGTTCCAGG ACTATACAGA
  GAAACCGTGT CTCGAAAAAA AAAAAACAAA AAAGGAAGAC AGAAAAGAAA AGAAAGGAGA
  AGAGAAGAGA AAAAAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52348700	NES15281839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45896621					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348700	NES15281839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62721099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	768 bp proximal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	326 bp upstream