CGGCC CACACTTTAT TAAGCATCTA G TACTGCACGT CACAAGTTTG CACAT G = G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|
ss147290274 | ENSMUSSNP2265224 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | ||
ss323387283 | CHEV_10_90546224 | CHEVERUD | SCREENING_POP | f | SNP | G | G | ||
SNP Consensus Information | |||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
LG/J |
SM/J |
||||
rs45897185 | SNP | G | G | G | G |
Location: Chr10:90919341 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Apaf1 | apoptotic peptidase activating factor 1 | 709 bp upstream | ||||||
Cpgi2099 | CpG island 2099 | within coordinates | ||||||
Ikbip | IKBKB interacting protein | within coordinates | ||||||
Rr402144 | regulatory region 402144 | 325 bp downstream | ||||||
Rr436976 | regulatory region 436976 | 1061 bp distal | ||||||
Rr436977 | regulatory region 436977 | 412 bp distal | ||||||
Tssr95222 | transcription start site region 95222 | 1376 bp downstream | ||||||
Tssr95223 | transcription start site region 95223 | 451 bp downstream | ||||||
Tssr95224 | transcription start site region 95224 | 404 bp downstream | ||||||
Tssr95225 | transcription start site region 95225 | 376 bp downstream | ||||||
Tssr98900 | transcription start site region 98900 | 902 bp upstream | ||||||
Tssr98901 | transcription start site region 98901 | 818 bp upstream | ||||||
Tssr98902 | transcription start site region 98902 | 779 bp upstream | ||||||
Tssr98903 | transcription start site region 98903 | 706 bp upstream | ||||||
Tssr98904 | transcription start site region 98904 | 672 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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