rs45897335 SNP Detail

Summary

• ID
  rs45897335
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGC GCAACTTCGA GGGCGCACCG
  G
  GAGAGGCGGC ATGCAGACTA TGGAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147525943	ENSMUSSNP4100092	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45897335					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	within coordinates
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1531 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	122 bp downstream
Tssr39549	transcription start site region 39549	65 bp downstream
Tssr39550	transcription start site region 39550	217 bp upstream
Tssr39551	transcription start site region 39551	247 bp upstream
Tssr39552	transcription start site region 39552	322 bp upstream
Tssr39553	transcription start site region 39553	356 bp upstream
Tssr39554	transcription start site region 39554	407 bp upstream
Tssr39555	transcription start site region 39555	606 bp upstream
Tssr39556	transcription start site region 39556	726 bp upstream